GScompare
Comparing oligonucleotide-based genomic signatures among sequences
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Comparison of Genomes: Ensembl Genomes Release 33 (October 2016; 41,610 genomes).
 

Ensembl Genomes

Oligonucleotide frequencies were used to compute distances among completely sequenced genomes within a genera and to cluster them. The resulting dendrograms are available by selecting the genera in the right.

These comparisons are provided as examples of the clustering power of oligonucleotides and to show the potencial of this method to cluster together related genomes. This method may be used even for typing within same species.

The sequenced used in this service were obtained from Release 33 (by EMBL-EBI). This releases includes the latest versions of 41,610 genomes (41,198 bacteria and 412 archaea) from the The International Nucleotide Sequence Database Collaboration (INSDC) archives. Comparison is only available when at least 5 genomes are vailable within the genera or species.

Identical service is also available for complete genomes from NCBI.

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Many genomes at Ensembl Genomes database are related to specific research articles. The table bellow shows the reference of the research articles, the number of genomes and the genera to witch the genomes described in the article belogn to, and a link to an oligonuclotide-based dendrogram generate by this service.

 

 Reference code
(Europe PubMed)
Nomber of genomes sequenced and genusOligonucleotide-based dendrogram
12338312788Salmonella
Dendrogram
22415862483Salmonella
Dendrogram
32258238276Escherichia
Dendrogram
42363763671Salmonella
Dendrogram
52366159565Helicobacter
Dendrogram
62491316556Klebsiella
Dendrogram
72575668056Methanosarcina
Dendrogram
82444975251Acinetobacter
Dendrogram
92264525945Bacillus
Dendrogram
102304550139Bradyrhizobium
Phyllobacterium
Pseudomonas
Pantoea
Rhizobium
Brevibacillus
Acidovorax
Caulobacter
Novosphingobium
Polaromonas
Variovorax
Chryseobacterium
Herbaspirillum
Flavobacterium
Dendrogram
112490121636Oenococcus
Dendrogram
122473228036Salmonella
Dendrogram
132240664235Chlamydia
Dendrogram
142593159234Burkholderia
Dendrogram
152593159134Bacillus
Dendrogram
162134509334Salmonella
Dendrogram
172389433834Lactobacillus
Dendrogram
182593159030Yersinia
Dendrogram
192435683927Bordetella
Dendrogram
202448268226Peptoclostridium
Dendrogram
212393548426Pseudomonas
Dendrogram
222351622626Escherichia
Dendrogram
232597779125Prochlorococcus
Dendrogram
242304550221Salmonella
Dendrogram
252291462220Klebsiella
Dendrogram
262568902318Xanthomonas
Dendrogram
272356425218Acinetobacter
Dendrogram
282593158917Francisella
Dendrogram
292587970616Vibrio
Loktanella
Pseudoalteromonas
Marinomonas
Ruegeria
Halomonas
Paracoccus
Dendrogram
302305230515Escherichia
Dendrogram
312136819615Neisseria
Dendrogram
322160235814Salmonella
Dendrogram
332179966414Pseudomonas
Dendrogram
342614786914[Haemophilus]
Dendrogram
352231542113Escherichia
Dendrogram
362226065413Salmonella
Dendrogram
372185944313Salmonella
Dendrogram
382378642312Chlamydia
Dendrogram
392260991512Gardnerella
Dendrogram
402485608812Campylobacter
Dendrogram
412373905012Vibrio
Dendrogram
422250567612Corynebacterium
Dendrogram
432333965812Listeria
Dendrogram
442303569112Lactobacillus
Dendrogram
452319443611Aggregatibacter
Dendrogram
462547983811Salmonella
Dendrogram
472538166411Campylobacter
Dendrogram
482405131211Helicobacter
Dendrogram
492457113211Enterococcus
Dendrogram
502575565111Leisingera
Ruegeria
Tateyamaria
Dendrogram
512405131910Haemophilus
Dendrogram
522301227810Helicobacter
Dendrogram
532552301810Bifidobacterium
Dendrogram
542523217810Klebsiella
Pantoea
Enterobacter
Escherichia
Dendrogram
552126950410Moraxella
Dendrogram
562442288610Paenibacillus
Bacillus
Viridibacillus
Dendrogram
572435682610Halomonas
Labrenzia
Marinobacter
Alcanivorax
Acinetobacter
Dendrogram
58231666759Cronobacter
Dendrogram
59234936779Streptococcus
Enterococcus
Dendrogram
60247049749Xanthomonas
Dendrogram
61219306779Vibrio
Dendrogram
62232091989Chlamydia
Dendrogram
63208020459Actinobacillus
Dendrogram
64170307939Lactobacillus
Leuconostoc
Streptococcus
Pediococcus
Lactococcus
Oenococcus
Dendrogram
65175506109Haemophilus
Dendrogram
66247237228Mucispirillum
Lactobacillus
Firmicutes
Parabacteroides
Clostridium
Eubacterium
Dendrogram
67196384238Acetobacter
Dendrogram
68226284868Mycoplasma
Dendrogram
69250098438Paraglaciecola
Aliiglaciecola
Glaciecola
Dendrogram
70231446998Acinetobacter
Dendrogram
71256767478Burkholderia
Escherichia
Dendrogram
72250700648Hyphomonas
Dendrogram
73247443318Helicobacter
Dendrogram
74232738498Rhodopirellula
Dendrogram
75260489378Lactobacillus
Dendrogram
76238234948Lactococcus
Leuconostoc
Dendrogram
77228631438Oenococcus
Dendrogram
78181599477Prochlorococcus
Dendrogram
79251563317Salmonella
Dendrogram
80203982777Enterococcus
Dendrogram
81228210137Candidatus
secondary
Dendrogram
82252126137Helicobacter
Brucella
Dendrogram
83227920737Pseudomonas
Dendrogram
84211263667Listeria
Dendrogram
85230510577Bordetella
Dendrogram
86256566247Escherichia
Dendrogram
87237296337Alteromonas
Dendrogram
88229337696Salmonella
Dendrogram
89239849676Campylobacter
Dendrogram
90194358476Sulfolobus
Dendrogram
91225359316Pseudoalteromonas
Dendrogram
92247237206Listeria
Dendrogram
93232798116Campylobacter
Dendrogram
94254897526Clostridium
Dendrogram
95240513186Helicobacter
Dendrogram
96245266376Rhodobacter
Dendrogram
97247237076Escherichia
Dendrogram
98226285055Salmonella
Dendrogram
99245655025Mycobacterium
Dendrogram
100245998935Listeria
Dendrogram
101233454575Candidatus
Dendrogram
102228154525Mycoplasma
Dendrogram
103249616925Chlamydia
Dendrogram
104244635245Asticcacaulis
Dendrogram
105213173335Escherichia
Dendrogram
106245582525Escherichia
Dendrogram
107230289505Salmonella
Dendrogram
108228435925Rhodanobacter
Dendrogram
109220264655Streptococcus
Dendrogram
110241368445Listeria
Dendrogram
111219525465Haemophilus
Dendrogram
112203082975Chlamydia
Dendrogram
113245166175Campylobacter
Dendrogram
114180600655Clostridium
Dendrogram