Frequency of nucleotides and oligonucleotides in a sequence

Copy your sequence in the textarea below
(non coding characters, as number, returns or spaces will be removed)
Or upload file (maximum file size: 100 KB txt/plain file):
Ocurrences for oligonucleotides of length:
  1 2 3 4 5 6 7 8
Standarized frequencies for oligonucleotides of length:
  1 2 3 4 5 6 7 8
Other frequencies:
  Zero'th Order Markov chain for tetranucleotides (ZOM)
  Fist Order Markov chain for tetranucleotides (FOM)
  Second Order Markov chain for tetranucleotides (SOM)
  Z-scores for tetranucleotides

Compute frequencies in



This version does not work with degenerated nucleotides.
The PHP script is FREELY available here.